| Friday, April 8 |
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3:00 - 7:30 PM
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Registration
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Grays Peak Foyer
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6:30 - 7:30 PM
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Refreshments
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Longs Peak Foyer
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7:30 - 8:30 PM
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Keynote Address (Joint)
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Quandary Peak
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Marc W. Kirschner,
Harvard Medical School
Specificity and Timing in the Cell Cycle: A Kinetic and Proteomic
Exploration
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| Saturday, April 9 |
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7:00 - 8:00 AM
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Breakfast
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Grays Peak
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8:00 - 11:15 AM
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Mapping and Analyzing Networks I (Joint)
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Quandary Peak
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Anne-Claude Gavin,
Cellzome AG
Global Interaction Networks Probed by Mass Spectrometry
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Marc Vidal,
Dana Farber Cancer Institute
Interactome Networks
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Matthias Mann,
Max-Planck Institute for Biochemistry
Global Elucidation of Phosphorylation Dependent Protein-Protein Interactions
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Michael Tyers,
University of Edinburgh
Integration of Interaction Networks
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Igor Stagljar,
University of Toronto
Short Talk: Large-Scale Analysis of Yeast and Human Integral Membrane Protein Interactions
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Ariel Jaimovich,
Hebrew University of Jerusalem
Short Talk: Towards an Integrated Probabilistic Protein-Protein Interaction Map
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9:20 - 9:40 AM
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Coffee Break
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Longs Peak Foyer
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11:15 AM - 1:00 PM
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Poster Setup
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Grays Peak
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1:00 - 10:00 PM
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Poster Viewing
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Grays Peak
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3:00 - 4:30 PM
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Workshop 1: Location, Location, Location: Mapping Phosphorylation
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Forest M. White,
Massachusetts Institute of Technology
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Alejandro M. Wolf Yadlin,
Massachusetts Institute of Technology
Comparative Phosphotyrosine Proteomics of the EGFR, HER2 and HER3 Pathways
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Steen Gammeltoft,
Glostrup Hospital, University of Copenhagen
Neural Network and Mass Spectrometry for Identification of Protein Kinase A Substrates Involved in Apoptosis
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Irina H. Kratchmarova,
University of Southern Denmark
Quantitative Proteomics of EGF and PDGF Signaling
Networks Reveals Controlling Mechanism of Mesenchymal Stem Cell Differentiation
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Hanno Steen,
Harvard Medical School
Stable Isotope-Free Relative and Absolute Quantitation of Protein Phosphorylation Stoichiometry by Mass Spectrometry
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4:30 - 5:00 PM
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Coffee & Snacks Available
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Longs Peak Foyer
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5:00 - 7:00 PM
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Proteomics in an Array Format
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Quandary Peak
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John J.M. Bergeron,
McGill University
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Michael Snyder,
Stanford University School of Medicine
Global Activity Mapping of Yeast Proteins
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Dolores J. Cahill,
Pfizer Inc.
Generation and Recent Applications of Protein and Antibody Arrays
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Amy E. Keating,
Massachusetts Institute of Technology
Short Talk: Combinatorial Associations of the Human bZIP Transcription Factors: Microarray Measurements and Computational Predictions
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Viorica Lopez-Avila,
Agilent Technologies, Inc.
Short Talk: Focused-Proteomics Using Protein Microarrays
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Erin N. Warren,
University of North Carolina at Chapel Hill
Short Talk: A Novel MS-Based Peptide Chip Approach for Quantitating Expression and Modification Levels of Cancer-Related Proteins
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7:00 - 8:00 PM
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Social Hour
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Grays Peak
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7:30 - 10:00 PM
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Poster Session 1
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Grays Peak
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| Sunday, April 10 |
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7:00 - 8:00 AM
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Breakfast
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Grays Peak
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8:00 - 11:15 AM
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Mapping and Analyzing Networks II (Joint)
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Quandary Peak
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Dalia Cohen,
Rosetta Genomics
Functional Genomics to New Drug Targets
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Catherine E. Costello,
Boston University School of Medicine
Glycoproteomics
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Richard A. Young,
Whitehead Institute for Biomedical Research
Yeast Transcriptional Networks
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Leroy E. Hood,
Institute for Systems Biology
Systems Approaches to Biology and Disease
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Andrew Emili,
University of Toronto
Short Talk: Interaction Network of Conserved and Essential
Protein Complexes in Escherichia coli
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Alan M. Moses,
University of California, Berkeley
Short Talk: Models for Evolution of Simple Transcription Networks
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9:20 - 9:40 AM
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Coffee Break
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Longs Peak Foyer
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11:15 AM - 1:00 PM
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Poster Setup
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Grays Peak
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1:00 - 10:00 PM
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Poster Viewing
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Grays Peak
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4:30 - 5:00 PM
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Coffee & Snacks Available
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Longs Peak Foyer
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5:00 - 7:00 PM
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Visualizing the Proteome
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Quandary Peak
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*
Catherine E. Costello,
Boston University School of Medicine
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Philippe Bastiaens,
European Molecular Biology Laboratory
Identification of Novel Proteins in Growth Factor Signaling by Functional Imaging on Cell Arrays
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Wolfgang P. Baumeister,
Max Planck Institute of Biochemistry
Exploring the Cellular Proteome by Cryo Electron Tomography
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Carol V. Robinson,
University of Oxford
Deciphering Multiprotein Complexes from the Cellular Environment
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Leonard J. Foster,
University of British Columbia
Short Talk: A Mammalian Organelle Map by Protein Correlation Profiling
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7:00 - 8:00 PM
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Social Hour
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Grays Peak
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7:30 - 10:00 PM
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Poster Session 2
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Grays Peak
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| Monday, April 11 |
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7:00 - 8:00 AM
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Breakfast
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Grays Peak
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8:00 - 11:00 AM
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Proteomic Databases
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Quandary Peak
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Leonard J. Foster,
University of British Columbia
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Cathy H. Wu,
Georgetown University Medical Center
UniProt and PIR Databases for Proteomic Bioinformatics
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Gianni Cesareni,
University of Rome Tor Vergata
Protein Interaction Domain Network in the MINT Database
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Christopher Hogue,
University of Toronto
The Roadmap for the Biomolecular Interaction Network Database and its Related Tools to Enable Proteomics Research
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Kara Dolinski,
Princeton University
Short Talk: Utilizing Bioinformatics Methods and Open Source Packages to Create Useful Functional Genomics Tools for the Research Community
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Michael Hippler,
Plant Science Institute
Short Talk: Digging into the Proteome of Chlamydomonas by Optimizing the Search of Mass Spectrometric Data in Genomic Databases
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David P. Leader,
University of Glasgow
Short Talk: The Protein Motif Database
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9:20 - 9:40 AM
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Coffee Break
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Longs Peak Foyer
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11:00 AM - 1:00 PM
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Poster Setup
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Grays Peak
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1:00 - 10:00 PM
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Poster Viewing
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Grays Peak
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3:00 - 4:30 PM
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Workshop 2: Protein IDS: How Certain do the Results Need to Be?
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Roman Zubarev,
Uppsala University
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Vanathi Gopalakrishnan,
University of Pittsburgh
Proteomic Data Mining identifies Potential Biomarkers of Amyotrophic Lateral Sclerosis
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Joshua E. Elias,
Harvard Medical School
Comparative Evaluation of Complementary MS/MS Analysis and Instrumentation Platforms
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Michael L. Nielsen,
Uppsala University
Doubling the Number of Identified Proteins using Complementary Fragmentation Techniques in Fourier Transform Mass Spectrometry On-line with nanoLC
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Maria E. Warren,
University of North Carolina at Chapel Hill
In-gel Digestion from Unstained Gels for Increased Confidence in Protein Identification
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4:30 - 5:00 PM
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Coffee & Snacks Available
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Longs Peak Foyer
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5:00 - 7:00 PM
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Protein Mapping
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Quandary Peak
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Matthias Mann,
Max-Planck Institute for Biochemistry
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Roman Zubarev,
Uppsala University
ECD FTMS for Complete Protein Primary Structure Determination of Proteins
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Forest M. White,
Massachusetts Institute of Technology
Phosphoproteomic Analysis of Cellular Signaling
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John J.M. Bergeron,
McGill University
Proteomics of the Early Secretory Pathway
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Sean A. Beausoleil,
Harvard Medical School
Short Talk: Large-Scale, Automated Analysis of HeLa Cell Phosphoproteins
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7:00 - 8:00 PM
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Social Hour
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Grays Peak
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7:30 - 10:00 PM
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Poster Session 3
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Grays Peak
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| Tuesday, April 12 |
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7:00 - 8:00 AM
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Breakfast
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Grays Peak
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8:00 - 9:20 AM
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Function and Dynamics of Networks
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Qauandry Peak
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Jennifer A. Lippincott-Schwartz,
National Institutes of Health
The Golgi Apparatus as a Two-Phase System for Protein Sorting and Transport
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David M. Sabatini,
Whitehead Institute for Biomedical Research
Deciphering Mammalian Signaling Networks
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9:40 - 11:00 AM
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Proteomics for Clinical Diagnostics
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Quandary Peak
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Ronald C. Hendrickson,
Merck Research Laboratories
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Catherine Fenselau,
Applications of Proteomics to Homeland Security: Rapid Analysis of Airborne Microorganisms
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Carol L. Nilsson,
Florida State University
Bacterial Proteomics and Vaccine Development
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Mahadevan Sethuraman,
Boston University School of Medicine
Short Talk: Isotope-Coded Affinity Tag (ICAT) Approach to the Proteomic Identification and Quantitation of Oxidant-Sensitive Cysteine Thiols in Complex Protein Mixtures
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Robert J. Cotter,
Johns Hopkins School of Medicine
Short Talk: Special K: The Center for Networks and Pathways of Lysome Modification
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9:20 - 9:40 AM
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Coffee Break
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Longs Peak Foyer
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4:30 - 5:00 PM
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Coffee & Snacks Available
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Longs Peak Foyer
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5:00 - 7:00 PM
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Quantitative Methods and Systems Biology
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Quandary Peak
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*
Matthias Mann,
Max-Planck Institute for Biochemistry
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Ruedi H. Aebersold,
Institute of Molecular Systems Biology, ETH Zurich
Quantitative Proteomics: An Essential Component of Systems Biology
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Dieter Oesterhelt,
Max Planck Institute of Biochemistry
A Quantitative Model of Archaeal Signal Transduction
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Robert L. Hettich,
Oak Ridge National Laboratory
Short Talk: Proteomics Measurements of a Natural Microbial Community Reveal Information about Community Structure and Metabolic Potential
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Judith A. Jebanathirajah,
Harvard Medical School
Short Talk: Directed Biomarkers: Phosphorylation Analysis of the Anaphase Promoting Complex in Response to Spindle Poisons and Cell Cycle Progression Using Mass Spectrometry
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Cameron O. Scarlett,
University of North Carolina at Chapel Hill
Short Talk: Modeling the In Vivo Subunit Assembly of a Multi-Component Protein Complex with Discrete Molecular Dynamics using Data from a Binary in Vitro Interaction Study and Crosslinking Combined with Mass Spectrometry
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7:00 - 8:00 PM
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Social Hour
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Grays Peak
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8:00 - 11:00 PM
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Entertainment
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Grays Peak
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| Wednesday, April 13 |
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Departure
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