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Systems Biology and Regulatory Networks (X5)

Organizer(s): Michael Snyder and Erin K. O'Shea
March 22 - 27, 2007
Sheraton Steamboat Resort  ·  Steamboat Springs, Colorado
Abstract Deadline: November 22, 2006
Late Abstract Deadline: December 21, 2006
Scholarship Deadline: November 22, 2006
Early Registration Deadline: January 23, 2007


Supported by the Director's Fund

Joint meeting: Cell Signaling and Proteomics (X6)
NOTE: Registration for meeting allows attendance at joint meeting (pending space availability).



This meeting took place in the 2007 season.

Listed below are current meetings that are similar to this meeting in nature/content:

For a complete list of the meetings for the upcoming/current season,
see our meeting list, or search for a meeting.
Summary of Meeting
The past several years has witnessed a revolution in the manner in which biological problems are analyzed. Large-scale systematic methods have been applied to analyze complex cellular and developmental processes and regulatory networks that control them. The goals of this meeting are to bring together leading investigators in the areas of genomics, proteomics and systems biology to discuss the elucidation of complex biological processes and the transcription and posttranscriptional networks that control them.

Thursday, March 22
3:00 - 7:30 PM Registration Foyer
6:30 - 7:30 PM Refreshments Foyer
7:30 - 9:30 PM Keynote Session (Joint) Mt. Werner/Sunshine
* John R. Yates, III, The Scripps Research Institute
* Steven P. Gygi, Harvard Medical School
Donald F. Hunt, University of Virginia
Innovative Technology for the Study of Cell Signaling
Lucy Shapiro, Stanford University
Spatial and Temporal Components of the Bacterial Cell Cycle Genetic Circuitry
Friday, March 23
7:00 - 8:00 AM Breakfast 3 Saddles/Bear River
8:00 - 11:15 AM Transcriptional Regulatory Networks Sunshine
Richard A. Young, Whitehead Institute for Biomedical Research
Regulatory Circuitry of Human Embryonic Stem Cells
Aviv Regev, Massachusetts Institute of Technology
Natural History and Evolutionary Principles of Gene Duplication in Fungi
Alexander Johnson, University of California, San Francisco
Evolution of Transcriptional Curcuits
* Gloria M. Coruzzi, New York University
A Systems Approach to Nitrogen Networks and the “VirtualPlant”
Mark D. Biggin, Lawrence Berkeley National Laboratory
Short Talk: Berkeley Drosophlia Transcription Network Project
Andrea Califano, Columbia University
Short Talk: Genome-Wide Discovery of Post-Translational Modulators of Transcriptional Interactions in Human B Lymphocytes
9:20 - 9:40 AM Coffee Break Foyer
11:15 AM - 1:00 PM Poster Setup Storm Peak/Rainbow/Twilight
1:00 - 10:00 PM Poster Viewing Storm Peak/Rainbow/Twilight
4:30 - 5:00 PM Coffee Available Foyer
5:00 - 7:00 PM Posttranslational Networks (Joint) Mt. Werner/Sunshine
Michael Snyder, Stanford University School of Medicine
Regulatory Networks in Eucaryotes
Steven P. Gygi, Harvard Medical School
Measuring Changes In Protein Phosphorylation State On A Proteome Scale
* Tony Pawson, Samuel Lunenfeld Research Institute
Interaction Domains in Cellular Regulation
7:00 - 8:00 PM Social Hour w/ Lite Bites Foyer
7:30 - 10:00 PM Poster Session 1 Storm Peak/Rainbow/Twilight
Saturday, March 24
7:00 - 8:00 AM Breakfast 3 Saddles/Bear River
8:00 - 11:15 AM Complex Systems I Sunshine
John R. Carlson, Yale University
Analysis of the Drosophila Olfactory System
* Susan K. Dutcher, Washington University School of Medicine
Comparative Genomic Analysis of Chlamydomonas Flagella and Insight into Human Disease
Phillippe Cluzel, University of Chicago
Inferring Cellular Response from Behavioral Variability in a Simple Signal Transduction Network
Stuart K. Kim, Stanford University Medical Center
Genome-Wide Views of Aging Gene Networks
Christopher J. Bakal, Harvard Medical School
Short Talk: Genetically Identical Cells can Adopt a Wide Variety of Shapes
Rodney J. Rothstein, Columbia University Medical Center
Short Talk: Taking a Global Approach to Explore how Cells Respond to DNA Damage
9:20 - 9:40 AM Coffee Break Foyer
11:15 AM - 1:00 PM Poster Setup Storm Peak/Rainbow/Twilight
1:00 - 10:00 PM Poster Viewing Storm Peak/Rainbow/Twilight
4:30 - 5:00 PM Coffee Available Foyer
5:00 - 7:00 PM Complex Systems II Sunshine
Erin K. O'Shea, Harvard University
Signal Processing by Promoters
Jack F. Greenblatt, University of Toronto
Protein and Genetic Interaction Networks for Pathway Elucidation
* Thomas R. Gingeras, Cold Spring Harbor Laboratory
Transcriptional Landscape of the Human Genome: Same Genomic Locus-Multiple Functional Transcripts
Yijun Ruan, Genome Institute of Singapore
Short Talk: Whole Genome Chromatin Interaction Analysis using Paired End diTag (CIA-PET) to Study Transcription Regulation in Cancer Cells
7:00 - 8:00 PM Social Hour w/ Lite Bites Foyer
7:30 - 10:00 PM Poster Session 2 Storm Peak/Rainbow/Twilight
Sunday, March 25
7:00 - 8:00 AM Breakfast 3 Saddles/Bear River
8:00 - 11:15 AM Posttranscriptional Regulatory Networks Sunshine
David P. Bartel, Massachusetts Institute of Technology
Global Analysis of microRNAs
Frank J. Slack, Yale University
Conserved microRNAs with New Roles
* Gisela T. Storz, National Institutes of Health
Wide Ranging Functions of Small RNAs in Bacteria
Alexander F. Schier, Harvard University
MicroRNAs in Vertebrate Embryogenesis
Kimberly Tu, Princeton University
Short Talk: Multiple Small RNAs Act Additively to Integrate Sensory Information and Control Quorum Sensing in Vibrio Harveyi
Manolis Kellis, Massachusetts Institute of Technology, Broad Institute
Short Talk: Regulatory Networks in 12 Drosophila genomes
9:20 - 9:40 AM Coffee Break Foyer
11:15 AM - 1:00 PM Poster Setup Storm Peak/Rainbow/Twilight
1:00 - 10:00 PM Poster Viewing Storm Peak/Rainbow/Twilight
4:30 - 5:00 PM Coffee Available Foyer
5:00 - 7:00 PM Cascades Controlling Developmental Fates (Joint) Mt. Werner/Sunshine
Ronald M. Evans, The Salk Institute
Nuclear Receptors: Metabolic Engineering and the Dawn of Synthetic Physiology - Balancing the Fat Equation
Ulrike Gaul, Rockefeller University
Decoding Transcription Control in Drosophila Segmentation
* Roger Brent, Molecular Sciences Institute
Physiology and Genetic Regulation of Cellular Signal Transmission
7:00 - 8:00 PM Social Hour w/ Lite Bites Foyer
7:30 - 10:00 PM Poster Session 3 Storm Peak/Rainbow/Twilight
Monday, March 26
7:00 - 8:00 AM Breakfast 3 Saddles/Bear River
8:00 - 11:00 AM Systems Analysis of Disease Sunshine
Vamsi K. Mootha, Massachusetts General Hospital
Systems Analysis of Human Mitochondrial Disorders
Brenda Andrews, University of Toronto
Systematic Yeast Genetics to Explore Biological Pathways and Kinase Targets
Maureen E. Hillenmeyer, Stanford University
Short Talk: The Chemical Genomic Portrait of the Cell Reveals a Phenotype for all Yeast Cells
* Garry P. Nolan, Stanford University
Mechanistic Insights from the Single Cell: Inference Engines for Signaling with Clinical Samlpes
Andrea H. Bild, University of Utah
Short Talk: Unique Patterns of Pathway Deregulation and Chemotherapeutic Responses in Breast Cancer Subtypes
Thomas G. Graeber, University of California, Los Angeles
Short Talk: Phosphoproteome Analysis of Drug-Resistant BCR-ABL Mutants Reveals Mutant-Specific Global Signaling Patterns and BCR-ABL ATP Binding Loop Phosphorylation Pattern-Based Determinants of Oncogenicity
9:20 - 9:40 AM Coffee Break Foyer
4:30 - 5:00 PM Coffee Available Foyer
5:00 - 7:00 PM Integrative Networks Sunshine
Aimee Dudley, Institute for Systems Biology
Analysis of Individual Expression Variation Reveals a Post Transcriptional Network
* Audrey P. Gasch, University of Wisconsin, Madison
Integrative Signaling Networks in the Regulation of Stress-Dependent Geomic Expression in Yeast
Edward M. Marcotte, University of Texas at Austin
Steps toward Directed Identification of Disease Genes: Rational Prediction of Loss of Function Phenotypes
Leroy E. Hood, Institute for Systems Biology
A Systems Approach to Disease: Predictive and Preventive Medicine
8:00 - 9:00 PM Social Hour w/ Lite Bites Storm Peak/Sunshine/Mt. Werner
8:00 - 11:00 PM Entertainment Storm Peak/Sunshine/Mt. Werner
Tuesday, March 27
Departure
*Session Chair   †Speaker invited, not yet responded.



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