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This meeting took place in 2012


Here are the related meetings in 2018:
Gene Control in Development and Disease (X6)

For a complete list of the meetings for the upcoming/current season, see our meeting list, or search for a meeting.

Eukaryotic Transcription (Z2)


Organizer(s) David S. Gilmour, Ramin Shiekhattar, Barbara Panning and Irwin Davidson
March 31—April 5, 2012
Snowbird Resort • Snowbird, Utah USA
Abstract Deadline: Nov 30, 2011
Late Abstract Deadline: Jan 5, 2012
Scholarship Deadline: Nov 30, 2011
Early Registration Deadline: Jan 30, 2012

Supported by the Directors’ Fund

Joint Meeting: Non-Coding RNAs (Z1)

Summary of Meeting:
Gene expression in eukaryotes is regulated primarily at the level of transcription. Biochemical, genetic and molecular genetic analyses of a handful of genes have provided a basic understanding of transcription. Advances in proteomics have rapidly expanded the repertoire of proteins and protein-protein interactions that participate in gene expression, and genome-wide analyses of protein distributions across genomes and gene expression are expanding and challenging our knowledge. For example, RNA polymerase II is found concentrated at the promoters of thousands of genes, causing much interest in the field to shift focus to the role of elongation in regulating gene expression. The functions of vast noncoding, transcribed regions of the genome are largely unknown. HDACs, thought to function primarily as repressors, tend to be associated with highly transcribed genes. This meeting will explore new and exciting aspects of eukaryotic gene regulation emerging from genomic, proteomic and other high-throughput techniques.

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Conference Program    Print  |   View meeting in 12 hr (am/pm) time


SATURDAY, MARCH 31

15:00—19:30
Registration

Ballroom Lobby
18:15—19:15
Refreshments

Ballroom Lobby
19:15—20:30
Welcome and Keynote Address
Meeting has ended...abstracts no longer viewable online.

Ballroom 1
David S. Gilmour, Pennsylvania State University, USA
Welcoming Remarks

* Ramin Shiekhattar, University of Miami, USA
Introduction of Keynote Speaker

Gerald R. Crabtree, Stanford University, USA
Chromatin Regulation in Developmental and Human Malignancy: New Concepts and Methods for Analysis


Following Session is for Non-Coding RNAs (Z1)

19:15—20:30
Welcome and Keynote Address
Meeting has ended...abstracts no longer viewable online.

Ballroom 2-3
John S. Mattick, Garvan Institute of Medical Research, Australia
Welcoming Remarks

* Jeannie T. Lee, Massachusetts General Hospital, USA
Introduction of Keynote Speaker

Nicholas J. Proudfoot, University of Oxford, UK
Defining Transcription Units in the Eukaryotic Genome: Transcriptional Termination, Intergenic Transcription and Non-Coding RNA


SUNDAY, APRIL 1

07:00—08:00
Breakfast

Golden Cliff/Eagles
08:00—11:00
Transcriptional Control by Non-Coding RNAs (Joint)
Meeting has ended...abstracts no longer viewable online.

Ballroom 1-3
* Thomas R. Gingeras, Cold Spring Harbor Laboratory, USA

Robert A. Martienssen, Cold Spring Harbor Laboratory, USA
Replication-Coupled Silencing and Spreading with RNAi

Craig S. Pikaard, HHMI/Indiana University, USA
Roles of RNA Polymerases IV and V in Noncoding RNA-Mediated Gene Silencing in Plants

Kevin V. Morris, Center for Gene Therapy, City of Hope, USA
Pseudogene Expressed Non-Coding RNAs: Bifunctional Modulators of Transcription and Translation in Human Cells

Ramin Shiekhattar, University of Miami, USA
Long Noncoding RNAs as Activators of Transcription

09:20—09:40
Coffee Break

Ballroom Lobby
11:00—13:00
Poster Setup

Superior/Superior Lobby/Wasatch
11:00
On Own for Lunch and Recreation

13:00—22:00
Poster Viewing

Superior/Superior Lobby/Wasatch
16:30—17:00
Coffee Available

Ballroom Lobby
17:00—19:00
Activators and Co-Regulatory Complexes
Meeting has ended...abstracts no longer viewable online.

Ballroom 1
* Ramin Shiekhattar, University of Miami, USA

Marc Timmers, University Medical Centre Utrecht, Netherlands
The Basal Transcription Factor TFIID and Pluripotency

Frank G. Grosveld, Erasmus University, Netherlands
Trancription Factor Networks in the Hematopoietic System

John T. Lis, Cornell University, USA
Use of Precision Nuclear Run-On Assays to Evaluate Features of Genes Genome-Wide that Modulate RNA Pol II Elongation

Astrid Eijkelenboom, University Medical Centre Utrecht, Netherlands
Short Talk: FOXO3a Regulates Target Gene Expression from Distal Enhancers


Following Session is for Non-Coding RNAs (Z1)

17:00—19:00
The Non-Coding RNA Landscape
Meeting has ended...abstracts no longer viewable online.

Ballroom 2-3
* David L. Spector, Cold Spring Harbor Laboratory, USA

Thomas R. Gingeras, Cold Spring Harbor Laboratory, USA
Transcription and Non-Coding RNAs: Insights from Mammalian Genomes

Piero Carninci, RIKEN Center for Life Science Technologies, Japan
Complexity of Mammalian Transcription Analyzed by Deepcage

John S. Mattick, Garvan Institute of Medical Research, Australia
Long ncRNAs in Human Evolution, Development and Cognition

Leonard Lipovich, Wayne State University, USA
Short Talk: Human Brain Long Non-Coding RNA Transcriptomics in vivo: Activity-Dependent Cis-Regulation

19:00—20:00
Social Hour with Lite Bites

Superior/Superior Lobby/Wasatch
19:30—22:00
Poster Session 1

Superior/Superior Lobby/Wasatch

MONDAY, APRIL 2

07:00—08:00
Breakfast

Golden Cliff/Eagles
08:00—11:15
Biochemistry of Transcription and Chromatin Modulation
Meeting has ended...abstracts no longer viewable online.

Ballroom 1
* Marc Timmers, University Medical Centre Utrecht, Netherlands

Geeta J. Narlikar, University of California, San Francisco, USA
Mechanisms of ATP-Dependent Chromatin Remodeling Machines

Danny F. Reinberg, HHMI/New York University, USA
A Molecular Understanding of Epigenetics

W. Lee Kraus, University of Texas Southwestern Medical Center, USA
The Role of PARP-1 in Chromatin-Mediated Gene Regulation: Control of Cellular Signaling and Differentiation Programs

Craig D. Kaplan, Texas A&M University, USA
Mechanism and Regulation of RNA Polymerase II Elongation in Saccharomyces cerevisiae

Anand Ranjan, NCI, National Institutes of Health, USA
Short Talk: Chromatin Architecture at Gene Promoters Recruits SWR1 for Histone H2A.Z Replacement

Brian A. Lewis, CCR, NCI, National Institutes of Health, USA
Short Talk: A Role for the O-GlcNAc Modification of the CTD of Human RNA Polymerase II in Transcription


Following Session is for Non-Coding RNAs (Z1)

08:00—11:00
ncRNAs in Cell and Developmental Biology I
Meeting has ended...abstracts no longer viewable online.

Ballroom 2-3
* Jeannie T. Lee, Massachusetts General Hospital, USA

Antonio García de Herreros, Universitat Pompeu Fabra, Spain
Antisense Transcription in Epithelial to Mesenchymal Transition

David L. Spector, Cold Spring Harbor Laboratory, USA
Generation and Characterization of a Malat1 Loss-of-Function Mouse Model

Seth Blackshaw, Johns Hopkins University School of Medicine, USA
Regulation of Retinal Development by Long Non-Coding RNAs

Martin J. Walsh, Mount Sinai School of Medicine, USA
Long-Range Chromatin Interactions are Associated with Enhancer RNAs (eRNAs) and RPC32-alpha Containing Pol III-alpha-Directed Transcription in ES Cells

Rachel Duffié, Institut Curie, France
Short Talk: A Transient Oocyte-Inherited Imprint with Lifelong Effects

09:20—09:40
Coffee Break

Ballroom Lobby
11:15—13:00
Poster Setup

Superior/Superior Lobby/Wasatch
11:15
On Own for Lunch and Recreation

13:00—22:00
Poster Viewing

Superior/Superior Lobby/Wasatch
14:30—16:30
Workshop 1

Ballroom 1
* David S. Gilmour, Pennsylvania State University, USA

Christopher Benner, University of California, San Diego, USA
Sequencing the 5’ Ends of Nascent RNA Reveals Features Driving eRNA Transcription

Petra C. Schwalie, EPFL, Switzerland
Evolution of CTCF Binding in Vertebrates

Colin S. Maxwell, Duke University, USA
Short Capped RNAs and Nuclear Run-On Reveal Pol II Pausing and Backtracking in C. elegans

Zong Wei, The Salk Institute for Biological Studies, USA
Elucidating the Dynamics of Interchromosomal Interactions during Somatic Cell Reprogramming

Yuichiro Takagi, Indiana University, USA
Architecture of the Mediator Head Module

Thierry Lagrange, Centre National pour la Recherche Scientifique, France
Mechanisms of Transcriptional Gene Silencing in Arabidopsis thaliana

Staton L. Wade, NIEHS, National Institutes of Health, USA
The miR-302 Family Regulates SWI/SNF Complex Composition in Human Embryonic Stem Cells

Anne Schaefer, Mount Sinai School of Medicine, USA
PRC2 Governs Adult Neuron Specification and Function

16:30—17:00
Coffee Available

Ballroom Lobby
17:00—19:00
Chromatin Dynamics and Transcriptional Activation
Meeting has ended...abstracts no longer viewable online.

Ballroom 1
* Joseph C. Reese, Pennsylvania State University, USA

Ali Shilatifard, Northwestern University, USA
Transcription, Chromatin, Epigenetics and Cancer

Jerry L. Workman, Stowers Institute for Medical Research, USA
Protein Complexes that Modify Chromatin and Regulate Gene Expression

Shelley L. Berger, University of Pennsylvania, USA
Chromatin Role in Eukaryotic Aging and Senescence

Clay Wakano, NCI, National Institutes of Health, USA
Short Talk: Dynamic in vivo Shuttling of Elongation Factors at a Gene Array in the Mammalian Nucleus


Following Session is for Non-Coding RNAs (Z1)

17:00—19:00
ncRNAs in Cell and Developmental Biology II
Meeting has ended...abstracts no longer viewable online.

Ballroom 2-3
* Piero Carninci, RIKEN Center for Life Science Technologies, Japan

Elissa P. Lei, NIDDK, National Institutes of Health, USA
Non-Coding Function for mRNA in Chromatin Insulator Activity

Richard G. Jenner, University College London, UK
Short CpG-Island RNAs and Polycomb-RNA Interactions

Carla Klattenhoff, Massachusetts Institute of Technology, USA
Short Talk: The LincRNA Braveheart is Required for Cardiomyocyte Differentiation

Neil Brockdorff, University of Oxford, UK
Short Talk: Investigating a Role for Non-Coding RNA in H3K27me3 Independent Recruitment of PRC1 Mediated by RYBP

Nicola Illing, University of Cape Town, South Africa
Short Talk: Long Non-Coding RNAs and the Evolution of the Bat Wing

19:00—20:00
Social Hour with Lite Bites

Superior/Superior Lobby/Wasatch
19:30—22:00
Poster Session 2

Superior/Superior Lobby/Wasatch

TUESDAY, APRIL 3

07:00—08:00
Breakfast

Golden Cliff/Eagles
08:00—11:15
Regulation of Transcription Elongation
Meeting has ended...abstracts no longer viewable online.

Ballroom 1
* Craig D. Kaplan, Texas A&M University, USA

Karen Adelman, Harvard Medical School, USA
Investigating the Functions of Promoter-Proximally Paused Pol II

Joseph C. Reese, Pennsylvania State University, USA
Biochemical Analysis of Yeast Elongation Factors

Vasily M. Studitsky, Robert Wood Johnson Medical School, USA
Mechanisms of Histone Survival and Transcription through Chromatin

David S. Gilmour, Pennsylvania State University, USA
RNA Polymerase II Dynamics and Promoter Proximal Pausing

Mounia Lagha, University of California, Berkeley, USA
Short Talk: Transcriptional Precision in the Drosophila Embryo: Importance of Pol II Pausing

Laura M. Milligan, University of Edinburgh, UK
Short Talk: The Bre5-Ubp3 Complex Links RNA Surveillance to RNA Polymerase II Regulation by Ubiquitylation


Following Session is for Non-Coding RNAs (Z1)

08:00—11:00
RNA in Epigenetic Processes I
Meeting has ended...abstracts no longer viewable online.

Ballroom 2-3
* John S. Mattick, Garvan Institute of Medical Research, Australia

Howard Y. Chang, Stanford University, USA
Genome Regulation by Long Noncoding RNAs

Jeannie T. Lee, Massachusetts General Hospital, USA
X-Inactivation, Xist RNA, and Stem Cells

John L. Rinn, University of Colorado, Boulder, USA
Linking RNA to Human Health

Jason A. West, Amgen, USA
Short Talk: The Genomic Binding Sites of Mammalian lncRNAs

Anne E. Corcoran, Babraham Institute, UK
Short Talk: Non-Coding RNA Transcription Directs Immunoglobulin Recombination

Keith W. Vance, University of Oxford, UK
Short Talk: A Novel Chromatin Associated Long Intergenic Non-Coding RNA Functions to Control Neuronal Growth and Differentiation

09:20—09:40
Coffee Break

Ballroom Lobby
11:15—13:00
Poster Setup

Superior/Superior Lobby/Wasatch
11:15
On Own for Lunch and Recreation

13:00—22:00
Poster Viewing

Superior/Superior Lobby/Wasatch
14:30—16:30
Workshop 2

Ballroom 2
* David S. Gilmour, Pennsylvania State University, USA

Timothy M. Chlon, Northwestern University, USA
Direct Modulation of Chromatin Occupancy by a Non DNA Binding Cofactor: Novel Paradigm of Gene Regulation

Alessia Cavazza, Dana Farber Cancer Institute, Harvard Medical School, USA
Genome-Wide Definition of Transcriptionally Active Regulatory Elements in Human Epithelial Differentiation

Jun Zhu, NHLBI, National Institutes of Health, USA
Genetic and Epigenetic Regulation of Eukaryotic Transcriptome

Oksana Maksimenko, Institute of Gene Biology, Russian Academy of Science, Russia
Eny2/Sus1 Protein is the Barrier Component of the Boundaries in the Bithorax-Complex

Jonathan E. Freaney, Northwestern University, USA
Transcriptional Regulation of Human Type I IFN Genes

Yunsun Nam, University of Texas Southwestern Medical Center, USA
Regulation of let-7 microRNA Biogenesis by Lin28

Rob N. Plasschaert, University of Pennsylvania, USA
The Regulation of CTCF Occupancy and Function may be Controlled by Differences in Binding Site Sequence during ES Cell Differentiation


Following Session is for Non-Coding RNAs (Z1)

14:30—16:30
Workshop 1: Recent Observations of Non-Coding RNAs
What are the most exciting recent observations about the roles and functions of ncRNAs?

Ballroom 3/Maybird
* Leonard Lipovich, Wayne State University, USA

Andrea Pauli, Harvard University, USA
Systematic Identification of Long Non-Coding RNAs Expressed during Zebrafish Embryogenesis

Erin P. Poth, Johns Hopkins University School of Medicine, USA
A High Throughput Approach to Studying lncRNA-Protein Interactions during Development

Antonis Giannakakis, A-Star, Singapore
Identification and Functional Validation of Novel Non-Coding RNAs As Regulators of the Cellular Stress Response to Oncogenic Insults

Shinichi Nakagawa, Hokkaido University, Japan
An Architectural Long Noncoding RNA NEAT1 Controls Corpus Luteum Formation in an Age-Dependent Manner

Dirk A. Kleinjan, MRC HGU at the MRC IGMM at the University of Edinburgh, UK
Investigating the Function of the Long Non-Coding RNA Sox2ot

Saba Valadkhan, Case Western Reserve University, USA
A Bifunctional Long Non-Coding RNA Links Neuronal Differentiation to Survival after Stress

Beatrix Suess, Technical University Darmstadt, Germany
Engineered Riboswitches - An Alternative Means to Control Gene Expression

16:30—17:00
Coffee Available

Ballroom Lobby
17:00—19:00
Transcriptional Repression
Meeting has ended...abstracts no longer viewable online.

Ballroom 2
* Karen Adelman, Harvard Medical School, USA

Alexander Tarakhovsky, Rockefeller University, USA
Histone Mimicry

Thomas Jenuwein, Max Planck Institute of Immunobiology and Epigenetics, Germany
H3K9me1 is Essential to Initiate and Maintain Mammalian Heterochromatin Organization

Tony Kouzarides, University of Cambridge, UK
Chromatin Modification Pathways and their Role in Cancer

Valerio Orlando, King Abdullah University of Science and Technology, Saudi Arabia
Short Talk: Chromatin Associated RNAi Components Take Part in Active Transcriptional Regulation in Drosophila


Following Session is for Non-Coding RNAs (Z1)

17:00—19:00
RNA Regulation in Non-Mammalian Systems
Meeting has ended...abstracts no longer viewable online.

Ballroom 3/Maybird
* Andreas Werner, University of Newcastle upon Tyne, UK

Gisela T. Storz, National Institutes of Health, USA
Small RNA Regulation of Gene Expression in Bacteria

Jennifer A. Doudna, HHMI/University of California, Berkeley, USA
Molecular Interactions in CRISPR-Mediated Bacterial Immunity

Jin-Wu Nam, Hanyang University, South Korea
Short Talk: Long Non-Coding RNAs in C. elegans

Phil Chi Khang Au, CSIRO, Australia
Short Talk: Long Non-Coding RNAs and Their Regulatory Roles in Epigenetic Control of Gene Expression in Plants

Chiat Koo Lim, Baylor College of Medicine, USA
Short Talk: Autoregulation of the Drosophila Noncoding roX1 RNA Gene

19:00—20:00
Social Hour with Lite Bites

Superior/Superior Lobby/Wasatch
19:30—22:00
Poster Session 3

Superior/Superior Lobby/Wasatch

WEDNESDAY, APRIL 4

07:00—08:00
Breakfast

Golden Cliff/Eagles
08:00—11:15
Transcriptional Regulation in Stem Cells and during Development
Meeting has ended...abstracts no longer viewable online.

Ballroom 2
* Ali Shilatifard, Northwestern University, USA

Samuel A. Myers, Broad Institute of Harvard and MIT, USA
Polycomb Repressive Complex 2 Is Necessary for the Normal Site-Specific O-GlcNAc Distribution in Mouse Embryonic Stem Cells

Elaine V. Fuchs, HHMI/Rockefeller University, USA
Transcriptional and microRNA Governance of Skin Stem Cells and their Lineages

Bradley R. Cairns, HHMI/University of Utah, USA
Chromatin Dynamics in Zebrafish Germ Cells and Embryos

Rana K. Gupta, University of Texas Southwestern Medical Center, USA
Transcriptional Control of Preadipocyte Determination

Alan Cyril Mullen, Harvard Medical School, USA
Short Talk: TGF-beta Signaling during Endodermal Differentiation

Ivan Krivega, NIDDK, National Institutes of Health, USA
Short Talk: Homo-Dimerization of Ldb1 is Necessary for Activation of the Mouse beta-Globin Gene Expression


Following Session is for Non-Coding RNAs (Z1)

08:00—11:15
RNA in Epigenetic Processes and Disease II
Meeting has ended...abstracts no longer viewable online.

Ballroom 3/Maybird
* Jennifer A. Doudna, HHMI/University of California, Berkeley, USA

Andreas Werner, University of Newcastle upon Tyne, UK
The Bigger Picture of Natural Antisense Transcription

Andrew P. Feinberg, Johns Hopkins University School of Medicine, USA
DNA Methylation, Epigenetic Instability and Cancer

Claes Wahlestedt, University of Miami, Miller School of Medicine, USA
Targeting Antisense RNAs

Sven Diederichs, German Cancer Research Center DKFZ, Germany
The Non-Coding RNA Landscape of Lung, Liver and Breast Cancer

Eduardo Eyras, Universitat Pompeu Fabra, Spain
Short Talk: A Histone + Small RNA Code for Splicing Regulation

Athanasios Zovoilis, University of Lethbridge, Canada
Short Talk: Massively Parallel Sequencing Reveals Association of Promoter Associated Small Non-Coding RNAs with Cancer

09:20—09:40
Coffee Break

Ballroom Lobby
11:15
On Own for Lunch and Recreation


Following Session is for Non-Coding RNAs (Z1)

14:30—16:30
Workshop 2: Recent Observations of Non-Coding RNAs

Ballroom 3/Maybird
* Kevin V. Morris, Center for Gene Therapy, City of Hope, USA

Mariano Alló, Universidad de Buenos Aires, Argentina
Genome-Wide Analyses Reveal Key Roles for Argonaute-1 in Splicing and Alternative Splicing in Human Cells

Keith E. Giles, University of Alabama at Birmingham, USA
A Genome-Wide Analysis of the Localization and Function of Chromatin-Bound Human Argonaute 2

Stefanie Binder, Institute of Clinical Immunology, LIFE, University of Leipzig, Germany
Identification of Chromatin-Associated Non-Coding RNAs

J. Mauro Calabrese, University of North Carolina at Chapel Hill, USA
Site-Specific Silencing of Regulatory Elements as a Mechanism of X-Inactivation

Jeff Coller, Case Western Reserve University, USA
Decapping of Long Non-Coding RNAs Regulates Inducible Genes

Carla Winterling, Max Planck Institute for Infection Biology, Germany
Induction of Long Non-Coding Transcripts by Influenza A: Regulators of Virus Infection?

Riki Kurokawa, Saitama Medical University, Japan
Promoter-Associated Non-Coding RNA and Arginine-Specific Methylation of RNA-Binding Protein TLS

16:30—17:00
Coffee Available

Ballroom Lobby
17:00—19:00
Functional Organization of the Nucleus
Meeting has ended...abstracts no longer viewable online.

Ballroom 2
* John T. Lis, Cornell University, USA

Victor G. Corces, Emory University, USA
Chromosome Folding Affects Transcription in a Manner Independent of Classical Chromatin Marks

Maarten Fornerod, Erasmus University Medical Center, Netherlands
Chromatin Interactions with Components of the Nuclear Periphery

Job Dekker, University of Massachusetts Medical School, USA
Three-Dimensional Organization of Gene Expression

Nick Gilbert, University of Edinburgh, UK
Short Talk: Transcription Remodels Supercoiling Domains Unfolding Large Scale Chromatin Structures


Following Session is for Non-Coding RNAs (Z1)

17:00—19:00
RNA in Transgenerational Inheritance
Meeting has ended...abstracts no longer viewable online.

Ballroom 3/Maybird
* Claes Wahlestedt, University of Miami, Miller School of Medicine, USA

Andrew M. Spence, University of Toronto, Canada
Epigenetic Licensing of Germ-Line Gene Expression by Maternal RNA in C. elegans

Minoo Rassoulzadegan, Université de Nice, France
RNA-Mediated Heredity of Epigenetic States

Oded Rechavi, Tel Aviv University, Israel
Short Talk: Transgenerational Inheritance of an Acquired Small RNA-Based Antiviral Response in C. elegans

19:00—20:00
Social Hour with Lite Bites

Golden Cliff/Eagles
20:00—23:00
Entertainment

Golden Cliff/Eagles

THURSDAY, APRIL 5

 
Departure


*Session Chair †Invited, not yet responded.



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