Hilton Santa Fe Historic Plaza Hotel Floorplan

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This meeting took place in 2003



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Functional Genomics: Global Analysis of Complex Biological Systems (C6)


Organizer(s) Stuart Kim, Richard Young and Adam Arkin
February 20—25, 2003
Hilton Santa Fe Historic Plaza Hotel • Santa Fe, New Mexico USA
Abstract Deadline: Oct 21, 2002
Late Abstract Deadline:
Scholarship Deadline:
Early Registration Deadline: Dec 20, 2002

Sponsored in part by The Director's Sponsor Fund

Summary of Meeting:
The revolution in functional genomics has provided a windfall of expression, functional and protein interaction data. These have led to remarkable advances in molecular profiles for cancer, assembly of genetic regulatory hierarchies, genome-wide analysis of development and systematic searches for drug targets. The success of functional genomics has relied heavily in interdisciplinary interactions from diverse fields such as genetics, computer science, medicine and engineering. A current challenge in functional genomics is to develop analytical methods and data mining algorithms to keep up with the avalanche of data being generated. Methods are also needed to integrate data from diverse genome-wide expression profiles and to apply common themes from model organisms to human disease. Progress in holistic approaches will shed light on complex biological systems, such as cancer profiling, developmental morphogenesis, and quantitative genetics. The goal of the meeting is to integrate advances in human disease, modeling of genetic networks, quantitative trait mapping, and data mining techniques.

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No registration fees are used to fund entertainment or alcohol at this conference

Conference Program    Print  |   View meeting in 12 hr (am/pm) time


THURSDAY, FEBRUARY 20

15:00—19:00
Registration

Promenade
18:15—19:15
Welcome

Promenade
19:15—19:30
Orientation

Mesa A-B
19:30—20:30
Keynote Address
Meeting has ended...abstracts no longer viewable online.

Mesa A-B
Ronald W. Davis, Stanford University, USA
Using Bar Codes to Find Drug Targets


FRIDAY, FEBRUARY 21

07:00—08:00
Breakfast

Chamisa
08:00—11:00
Genetic Regulatory Hierarchies
Meeting has ended...abstracts no longer viewable online.

Mesa A-B
Lucy Shapiro, Stanford University, USA
Genome-Wide Analysis of a Bacterial Cell Cycle

Barbara Wold, California Institute of Technology, USA
Regulatory Network Building

* Richard A. Young, Whitehead Institute for Biomedical Research, USA
Transcriptional Regulatory Networks in Living Cells

Mark Johnston, Washington University School of Medicine, USA
Using the Results of Evolution's Experiments to Find Functional Sequences in the Yeast Genome

Ken W.Y. Cho, University of California, Irvine, USA
Short Talk: Phylogenetic Footprinting and DNA Microarray Analyses to Study TGF-beta Growth Factor Signaling Regulation

09:20—09:40
Coffee Break

Promenade
11:00—13:00
Poster Setup

Mesa C/Aspen
13:00—22:00
Poster Viewing

Mesa C/Aspen
16:30—17:00
Coffee & Snacks Available

Promenade
17:00—19:00
Functional Modules
Meeting has ended...abstracts no longer viewable online.

Mesa A-B
Harley H. McAdams, Stanford University Medical Center, USA
Genetic Regulatory Network Architecture in C. crescentus

* Adam P. Arkin, University of California, Berkeley, USA
Computer Models of Cell Circuitry

Becky L. Drees, Institute for Systems Biology, USA
Short Talk: Inference of a Genetic Network in S. cerevisiae from High-Throughput Genetics and Quantitative Phenotype Assays

19:00—20:00
Social Hour

Mesa C/Aspen
20:00—22:00
Poster Session 1

Mesa C/Aspen

SATURDAY, FEBRUARY 22

07:00—08:00
Breakfast

Chamisa
08:00—11:00
Global Analysis
Meeting has ended...abstracts no longer viewable online.

Mesa A-B
* Stuart K. Kim, Stanford University Medical Center, USA
Global Analysis of Gene Expression in C. elegans

Matthew P. Scott, Stanford University, USA
Genomic Approaches to Mesoderm Development

Gregor Eichele, Max Planck Institute for Experimental Endocrinology, Germany
Neurobiology in the Postgenomic Era: Exploring Links Between Chromosomal Organization and Gene Expression Patterns in the Brain Using High-Throughput Approaches

Maitreya J. Dunham, Stanford University, USA
Short Talk: DNA Copy Number Changes Accompany Experimental Evolution in S. cerevisiae

Iiris Hovatta, University of Helsinki, Finland
Short Talk: Gene Expression Profiling in Six Inbred Mouse Strains Reveals Candidate Genes for Anxiety

09:20—09:40
Coffee Break

Promenade
11:00—13:00
Poster Setup

Mesa C/Aspen
13:00—22:00
Poster Viewing

Mesa C/Aspen
16:30—17:00
Coffee & Snacks Available

Promenade
17:00—19:00
Knock Outs I
Meeting has ended...abstracts no longer viewable online.

Mesa A-B
* Michael P. Snyder, Stanford University School of Medicine, USA
Global Analysis of Genomes and Proteomes

Julie Ahringer, University of Cambridge, UK
Functional Analysis of the C. elegans Genome by RNA-Mediated

Norbert Perrimon, Harvard Medical School, USA
Genetic analysis in cell culture: Using RNAi screens to identify cell-based gene functions

Lawrence Lum, University of Texas, Southwestern Medical Center, USA
Short Talk: Identification of Hedgehog Pathway Components by RNA Interference in Drosophila Cultured Cells

19:00—20:00
Social Hour

Mesa C/Aspen
20:00—22:00
Poster Session 2

Mesa C/Aspen

SUNDAY, FEBRUARY 23

07:00—08:00
Breakfast

Chamisa
08:00—11:00
Human Genetics
Meeting has ended...abstracts no longer viewable online.

Mesa A-B
* Deborah A. Nickerson, University of Washington, USA
Variation in the Human Genome

Joseph R. Nevins, Duke University Medical Center, USA
Gene Expression Phenotypes of Oncogenic Pathways and Breast Cancers

Todd R. Golub, Broad Institute, USA
Genomic Information and Cancer

Benjamin A. Salisbury, Genaissance Pharmaceuticals, Inc., USA
Functionally Significant Polymorphisms: Identification by Population Genomics

Xuefeng (Bruce) Ling, Amgen Inc., USA
Short Talk: A Comparative Analysis Of HGSC and Celera Human Genome Assemblies and Gene Sets

09:20—09:40
Coffee Break

Promenade
11:00—13:00
Poster Setup

Mesa C/Aspen
13:00—22:00
Poster Viewing

Mesa C/Aspen
16:30—17:00
Coffee & Snacks Available

Promenade
17:00—19:00
Proteomics/Knockouts II
Meeting has ended...abstracts no longer viewable online.

Mesa A-B
Marc Vidal, Dana-Farber Cancer Institute, USA
Toward a Proteome Atlas for C. elegans

* Michael Tyers, University of Montreal, Canada
Genome-Wide Analysis of Commitment to Cell Division in Yeast

Patricia Ruiz, Metanomics Health GmbH, Germany
Short Talk: Functional Analysis of the Mammalian Genome by Large Scale Gene Trap Mutagenesis

Pedro Aza-Blanc, Sanford-Burnham Medical Research Institute, USA
Short Talk: Revealing Gene Function by RNAi-Based Phenotypic Screens in Mammalian Cells

19:00—20:00
Social Hour

Mesa C/Aspen
20:00—22:00
Poster Session 3

Mesa C/Aspen

MONDAY, FEBRUARY 24

07:00—08:00
Breakfast

Chamisa
08:00—11:00
Disease and Pharmacogenomics
Meeting has ended...abstracts no longer viewable online.

Mesa A-B
David M. Sabatini, Whitehead Institute for Biomedical Research, USA
High-Throughput Approaches to the Analysis of Gene Function in Mammalian Cells

* Geoffrey Duyk, TPG N.V, USA
Genetics in a Post-Genomics Era: Lessons from Model Systems

Thomas D. Wu, Genentech, Inc., USA
Tumor-Specific and Tissue-Specific Genes in the Human Genome

Carl Friddle, Lexicon Genetics, Inc., USA
Short Talk: High Throughput Mouse Knockouts for Academic Labs

09:20—09:40
Coffee Break

Promenade
16:30—17:00
Coffee & Snacks Available

Promenade
17:00—19:00
Data Analysis
Meeting has ended...abstracts no longer viewable online.

Mesa A-B
Michael B. Eisen, University of California, Berkeley, USA
Analysis of Gene Expression Data

* Terry Gaasterland, University of California, San Diego, USA
Deciphering MicroRNA Interactions with mRNA and Pre-mRNA Transcripts

David K. Gifford, Massachusetts Institute of Technology, USA
Learning Predictive Models of Cellular Systems

19:00—20:00
Social Hour

Mesa C
20:00—23:00
Entertainment

Mesa C

TUESDAY, FEBRUARY 25

 
Departure


*Session Chair †Invited, not yet responded.



We gratefully acknowledge the generous grant for this conference provided by:


National Institutes of Health

Grant No. 1 R13 GM067252-01




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